PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0002s0267.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1023aa    MW: 112133 Da    PI: 6.569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0002s0267.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08546567527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            Cr+f + G+C++G+ C+F H+p
  Sphfalx0002s0267.1.p 546 VCRYFVQ-GYCSRGEACPFLHSP 567
                           6**9999.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-5542567IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7544566IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859546568IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6546567IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5546566IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030398.666791022IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.101.5E-1206921018IPR011989Armadillo-like helical
SuperFamilySSF483711.11E-1066991017IPR016024Armadillo-type fold
CDDcd079201.04E-1467001017IPR033712Pumilio, RNA binding domain
SMARTSM000251.6E-6703738IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.364703738IPR001313Pumilio RNA-binding repeat
PfamPF008063.7E-6704737IPR001313Pumilio RNA-binding repeat
SMARTSM000251.7E-10739774IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.537739774IPR001313Pumilio RNA-binding repeat
PfamPF008061.0E-10739773IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0013777813IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.271777813IPR001313Pumilio RNA-binding repeat
PfamPF008067.2E-6778807IPR001313Pumilio RNA-binding repeat
SMARTSM000251.6E-6814849IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.017814849IPR001313Pumilio RNA-binding repeat
PfamPF008066.6E-8817848IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0071850885IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.711850885IPR001313Pumilio RNA-binding repeat
PfamPF008063.1E-5854879IPR001313Pumilio RNA-binding repeat
SMARTSM000250.21886921IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.317886921IPR001313Pumilio RNA-binding repeat
PfamPF008061.1E-5890909IPR001313Pumilio RNA-binding repeat
SMARTSM000255.1922957IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.711922957IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.501958996IPR001313Pumilio RNA-binding repeat
SMARTSM000258.1960996IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503024.7219971022IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MEQDDEEFEQ LLGEIPHVTS TNSVIDVIPR ATSAPPHLEE VQRVRGSSAA AVEEGASSGG  60
GKCGGEDDDD EATPHMLQPF VDIRCDEHYE SFYRSYAGVK KLPPPMDNRT LYSDFPVLSP  120
KASSTHISPF LAELLPLDDD VPSHRSSQRK QQRSDMQRKQ QQDALQQHQI TSQLQAAQQQ  180
QHREPSPNFQ APAGAHQYGA LSENDMSSNM SSDPHLTAAF GKLGFDEGGS NSLLQSLIDD  240
AGDNNRPIIS NGSSAAGGGL VGRPPLSNGH GLNGSNGLYA HHMDTFGTGS TASYDLYASR  300
SSPSLDLFQG KRLVSMNGLG NGSGSYDGMS DYAAEVSTEA LKKAFRQQNS PGGYGSGGAS  360
QYQQQQQQLE VVAATMQAAA RSQSAGATGN ILHSGRVQKQ TPFDYTVTDY FEAQAQAQAT  420
ATAAQYAQLE EQQQQQQQRL YIQQQLIERQ KQIQLLASLQ AQVNGKPGRD TYHPSGGRIP  480
VRGSRNSSDL QQLGFAAANA QHNEALQRKL RLHQSVNPDT VWGSNVDVSE FGLSENSRRV  540
PTVGSVCRYF VQGYCSRGEA CPFLHSPLQG MKAVSHTASV PVKEAFRATA TRDGRLPPYL  600
DKYLRRSLQE SHSGKANSFA PASGVQRISD VVSNGHANGH GYPNGHFSLG SGYVPPSPTD  660
VSDTLAHPQS RIQDHMEFDV GWQLIAPHNL QQQQPPKYTT LEEVEGHIYL IAKDQHGCRF  720
LQKKFDEGGP EDVEKIFREI ISHITELMKD PFGNYLVQKL LEVCDEKQRM EILHAVTMDG  780
ELVSISLNMH GTRAVQKLIE TLKSPEQVAM VIKALADGVV ELIKDLNGNH VVQRCLQKLS  840
HEDNQFIFDA AASHCVEIAT HRHGCCVMQR CVDFAIDHQR QHLVAEVAAN ALTLSQDPYG  900
NYVVQYILDL KTAWSSTEVM GRLEGNYAFL SMQKFSSNVV EKCLKLGVEE SRSRLVRELT  960
TSPHLGQLLQ DQYANYVIQS ALSVCKQGAL HAGLVEAIRP HLPALRNSPY GKRILSRTNP  1020
KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bwt_A3e-7670110158328Protein PUF4
4dzs_A3e-76700101529350Pumilio homology domain family member 4
4dzs_B3e-76700101529350Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S41_292V6.10.0(Physcomitrella patens)